polr3c.S polymerase (RNA) III (DNA directed) polypeptide C (62kD) S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: polr3c.S
Official Full Name: polymerase (RNA) III (DNA directed) polypeptide C (62kD) S homeolog
Primary source: Xenbase:XB-GENE-993201
Locus tag: XELAEV_18042875mg
See related: EnsemblRapid:ENSXLAG00005028466 AllianceGenome:Xenbase:XB-GENE-993201
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: rpc3; rpc62; polr3c
Summary: Predicted to enable single-stranded DNA binding activity. Predicted to act upstream of or within DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3C (RNA polymerase III subunit C). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 8S

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8S	NC_054386.1 (101195222..101204897)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8S	NC_030739.1 (96189733..96199369)

Chromosome 8S - NC_054386.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables single-stranded DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of DNA-directed RNA polymerase complex	IEA Inferred from Electronic Annotation more info
part_of RNA polymerase III complex	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: polymerase (RNA) III (DNA directed) polypeptide C (62kD) S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001093005.1 → NP_001086474.1 polymerase (RNA) III (DNA directed) polypeptide C (62kD) S homeolog

See identical proteins and their annotated locations for NP_001086474.1

Status: PROVISIONAL

Source sequence(s)

BC075179

UniProtKB/TrEMBL

A0A974C5P5, Q6DJJ8

Related

ENSXLAP00005084820.1, ENSXLAT00005086481.1

Conserved Domains (2) summary

pfam05645
Location:146 → 340

RNA_pol_Rpc82; RNA polymerase III subunit RPC82

pfam08221
Location:7 → 65

HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain