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rack1.S receptor for activated C kinase 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446289, updated on 17-Aug-2024

Summary

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Official Symbol
rack1.S
Official Full Name
receptor for activated C kinase 1 S homeolog
Primary source
Xenbase:XB-GENE-17344633
Locus tag
XELAEV_18042402mg
See related
EnsemblRapid:ENSXLAG00005010410
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
h12.3; hlc-7; pig21; gnb2l1; gnb2-rs1
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Genomic context

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See rack1.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (80053309..80060471, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (17283902..17575492, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (77671524..77678634, complement)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase S homeolog Neighboring gene carbohydrate sulfotransferase 4-like Neighboring gene butyrophilin subfamily 1 member A1-like Neighboring gene RING finger protein 225

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC130692

General protein information

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Preferred Names
receptor for activated C kinase 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092996.2 → NP_001086465.1  receptor for activated C kinase 1 S homeolog

    See identical proteins and their annotated locations for NP_001086465.1

    Status: VALIDATED

    Source sequence(s)
    BP687561, EB800825
    UniProtKB/TrEMBL
    A0A974C8D9, Q8AVP6, Q9W7I1
    Related
    ENSXLAP00005030694.1, ENSXLAT00005031451.1
    Conserved Domains (3) summary
    COG2319
    Location:2 → 310
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:7 → 311
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:18 → 61
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    80053309..80060471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041574234.1 → XP_041430168.1  receptor for activated C kinase 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8F3K2, A0A974C4A1, Q9W7I1
    Related
    ENSXLAP00005030689.1, ENSXLAT00005031446.1
    Conserved Domains (2) summary
    cd00200
    Location:1 → 270
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:26 → 62
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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