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gpatch4.L G-patch domain containing 4 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446277, updated on 18-Sep-2024

Summary

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Official Symbol
gpatch4.L
Official Full Name
G-patch domain containing 4 L homeolog
Primary source
Xenbase:XB-GENE-6251698
Locus tag
XELAEV_18040547mg
See related
EnsemblRapid:ENSXLAG00005030937
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
gpatc4; gpatch4
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Genomic context

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See gpatch4.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (124315195..124325166, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (109474150..109484115, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 24 L homeolog Neighboring gene NAD(P)HX epimerasen L homeolog Neighboring gene ubiquilin 4 L homeolog Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
G patch domain-containing protein 4
Names
G patch domain containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092988.1 → NP_001086457.1  G patch domain-containing protein 4

    See identical proteins and their annotated locations for NP_001086457.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097554
    UniProtKB/Swiss-Prot
    Q4V842, Q68F52
    Related
    ENSXLAP00005092635.1, ENSXLAT00005094319.1
    Conserved Domains (1) summary
    pfam01585
    Location:11 → 55
    G-patch; G-patch domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    124315195..124325166 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018228953.2 → XP_018084442.1  G patch domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A1L8FCD8, A0A974C9V9
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4V842.1 GenPept UniProtKB/Swiss-Prot:Q4V842

Gene LinkOut

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