ddx52.S DEAD-box helicase 52 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: ddx52.S
Official Full Name: DEAD-box helicase 52 S homeolog
Primary source: Xenbase:XB-GENE-993523
Locus tag: XELAEV_18014997mg
See related: EnsemblRapid:ENSXLAG00005010823
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: ddx52
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Genomic context

Location:: chromosome: 2S

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2S	NC_054374.1 (64484713..64504910)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2S	NC_030727.1 (60317580..60337180)

Chromosome 2S - NC_054374.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables RNA helicase activity	IEA Inferred from Electronic Annotation more info
enables helicase activity	IEA Inferred from Electronic Annotation more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within maturation of SSU-rRNA	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: DEAD-box helicase 52 S homeolog

Names: DEAD (Asp-Glu-Ala-Asp) box polypeptide 52

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001092987.1 → NP_001086456.1 DEAD-box helicase 52 S homeolog

See identical proteins and their annotated locations for NP_001086456.1

Status: PROVISIONAL

Source sequence(s)

BC124840

UniProtKB/TrEMBL

A0A974DJF2, A0AUS6

Related

ENSXLAP00005031988.1, ENSXLAT00005032769.1

Conserved Domains (3) summary

PRK11192
Location:168 → 606

PRK11192; ATP-dependent RNA helicase SrmB; Provisional

cd00079
Location:392 → 521

HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...

cl21455
Location:175 → 381

P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases