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otoa.L otoancorin L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446273, updated on 4-Nov-2024

Summary

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Official Symbol
otoa.L
Official Full Name
otoancorin L homeolog
Primary source
Xenbase:XB-GENE-5811284
Locus tag
XELAEV_18045329mg
See related
EnsemblRapid:ENSXLAG00005014423 AllianceGenome:Xenbase:XB-GENE-5811284
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
otoa; ct108; dfnb22
Summary
Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 22. Orthologous to human OTOA (otoancorin). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See otoa.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
32
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (111262944..111316067, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (100661708..100708432, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene PMS1 homolog 2, mismatch repair system component L homeolog Neighboring gene KDEL endoplasmic reticulum protein retention receptor 2 L homeolog Neighboring gene uncharacterized LOC121397972 Neighboring gene immunoglobulin superfamily member 6 Neighboring gene methyltransferase 9, His-X-His N1(pi)-histidine L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
otoancorin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    111262944..111316067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041576806.1 → XP_041432740.1  otoancorin

    UniProtKB/TrEMBL
    A0A1L8EXZ5, A0A974C0S4, Q6AX24

  2. XM_018236910.2 → XP_018092399.2  otoancorin

    UniProtKB/TrEMBL
    A0A1L8EXZ5, A0A974C0S4, Q6AX24
    Related
    ENSXLAP00005042208.1, ENSXLAT00005043274.1
Nucleotide Protein Strain
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