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chrne cholinergic receptor, nicotinic, epsilon [ Takifugu rubripes (torafugu) ]

Gene ID: 446012, updated on 5-Mar-2024

Summary

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Gene symbol
chrne
Gene description
cholinergic receptor, nicotinic, epsilon
See related
Ensembl:ENSTRUG00000016224
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
zebrafish all
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Genomic context

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See chrne in Genome Data Viewer
Location:
chromosome: 15
Exon count:
12
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 15 NC_042299.1 (13273523..13280347)
101 previous assembly FUGU5 (GCF_000180615.1) 15 NC_018904.1 (9415616..9421241)

Chromosome 15 - NC_042299.1Genomic Context describing neighboring genes Neighboring gene ATPase Na+/K+ transporting subunit beta 2b Neighboring gene glycolipid transfer protein domain containing 2b Neighboring gene phospholipase D2 Neighboring gene misshapen-like kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The nicotinic acetylcholine receptor gene family of the pufferfish, Fugu rubripes. Jones AK, et al. Genomics, 2003 Oct. PMID 13679024
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit gamma
Names
cholinergic receptor nicotinic epsilon subunit
nicotinic acetylcholine receptor epsilon subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042299.1 Reference fTakRub1.2 Primary Assembly

    Range
    13273523..13280347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029849010.1 → XP_029704870.1  acetylcholine receptor subunit gamma isoform X1

    UniProtKB/TrEMBL
    A0A674MNN1, Q7T2Y8
    Related
    ENSTRUP00000062738.1, ENSTRUT00000063074.1
    Conserved Domains (2) summary
    cd19029
    Location:51 → 244
    LGIC_ECD_nAChR_G; extracellular domain of nicotinic acetylcholine receptor subunit gamma (CHRNG)
    pfam02932
    Location:251 → 493
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  2. XM_029849011.1 → XP_029704871.1  acetylcholine receptor subunit gamma isoform X2

    UniProtKB/TrEMBL
    Q7T2Y8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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