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rpl7a.L ribosomal protein L7a L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 445840, updated on 4-Nov-2024

Summary

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Official Symbol
rpl7a.L
Official Full Name
ribosomal protein L7a L homeolog
Primary source
Xenbase:XB-GENE-17331209
Locus tag
XELAEV_18038372mg
See related
EnsemblRapid:ENSXLAG00005023529 AllianceGenome:Xenbase:XB-GENE-17331209
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
trup; surf3
Summary
Predicted to enable RNA binding activity. Predicted to act upstream of or within maturation of LSU-rRNA. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL7A (ribosomal protein L7a). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rpl7a.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (6902849..6906597, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (6781312..6785032, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene sulfotransferase family 1C member 3 L homeolog Neighboring gene MGC82053 protein Neighboring gene small nucleolar RNA SNORD36 Neighboring gene small nucleolar RNA SNORD36 Neighboring gene small nucleolar RNA SNORD36 Neighboring gene small nucleolar RNA SNORD24 Neighboring gene small nucleolar RNA SNORD24 Neighboring gene mediator complex subunit 22 L homeolog Neighboring gene alpha-1,4-N-acetylglucosaminyltransferase L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes. Takezaki N, et al. Mol Biol Evol, 2004 Aug. PMID 15128875
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within maturation of LSU-rRNA IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
60S ribosomal protein L7a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    6902849..6906597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018229524.2 → XP_018085013.1  60S ribosomal protein L7a

    UniProtKB/TrEMBL
    A0A974C5Y1, A2BDA8, A2VDA5
    Related
    ENSXLAP00005069588.1, ENSXLAT00005071123.1
Nucleotide Protein Strain
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