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Nphs1os nephrosis 1 homolog, nephrin, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 445267, updated on 17-Aug-2024

Summary

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Official Symbol
Nphs1osprovided by MGI
Official Full Name
nephrosis 1 homolog, nephrin, opposite strandprovided by MGI
Primary source
MGI:MGI:2675468
See related
Ensembl:ENSMUSG00000087009 AllianceGenome:MGI:2675468
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Nphs1as
Expression
Biased expression in kidney adult (RPKM 7.7), small intestine adult (RPKM 0.7) and 2 other tissues See more
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Genomic context

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See Nphs1os in Genome Data Viewer
Location:
7 B1; 7 18.36 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (30161589..30165016, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (30462164..30465591, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_18519 Neighboring gene amyloid beta precursor like protein 1 Neighboring gene kirre like nephrin family adhesion molecule 2 Neighboring gene predicted gene, 45979 Neighboring gene nephrosis 1, nephrin Neighboring gene ribosomal protein S12, pseudogene 4 Neighboring gene proline dehydrogenase (oxidase) 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Molecular cloning and characterization of an endogenous antisense transcript of Nphs1. Ihalmo P, et al. Genomics, 2004 Jun. PMID 15177566
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Other Names

  • nephrosis 1 homolog, nephrin antisense

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_004443.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC167970
    Related
    ENSMUST00000152625.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    30161589..30165016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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