wdr54 WD repeat domain 54 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: wdr54provided by ZNC
Official Full Name: WD repeat domain 54provided by ZNC
Primary source: ZFIN:ZDB-GENE-040801-151
See related: Ensembl:ENSDARG00000010248 AllianceGenome:ZFIN:ZDB-GENE-040801-151
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:100930
Summary: Orthologous to human WDR54 (WD repeat domain 54). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (43072951..43083484)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (42472777..42483331)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
involved_in cilium assembly	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in axoneme	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: WD repeat-containing protein 54

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001003630.2 → NP_001003630.2 WD repeat-containing protein 54

Status: PROVISIONAL

Source sequence(s)

BC077087

UniProtKB/TrEMBL

A0A8M1N1D1, F6NI92, Q6DEM3

Related

ENSDARP00000019506.7, ENSDART00000026020.8

Conserved Domains (3) summary

COG2319
Location:135 → 295

WD40; WD40 repeat [General function prediction only]

sd00039
Location:172 → 211

7WD40; WD40 repeat [structural motif]

cl02567
Location:81 → 284

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007116.7 Reference GRCz11 Primary Assembly

Range

43072951..43083484

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005165298.5 → XP_005165355.1 WD repeat-containing protein 54 isoform X1

UniProtKB/TrEMBL

A0A8M2BCK5, Q6DEM3

Conserved Domains (3) summary

COG2319
Location:135 → 304

WD40; WD40 repeat [General function prediction only]

sd00039
Location:172 → 211

7WD40; WD40 repeat [structural motif]

cl02567
Location:81 → 293

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...