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st8sia1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 444887, updated on 17-Aug-2024

Summary

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Official Symbol
st8sia1provided by Xenbase
Official Full Name
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1provided by Xenbase
Primary source
Xenbase:XB-GENE-5824739
See related
Ensembl:ENSXETG00000046896
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
Xlgd3; siat8; siat8a; st8siaI; st8sial
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See st8sia1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (89548019..89550925)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene intersectin-2-like Neighboring gene 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma-like Neighboring gene uridine monophosphate synthetase Neighboring gene integrin subunit beta 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030685.2 Chromosome 9 Reference UCB_Xtro_10.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular cloning and expression of alpha2,8-sialyltransferase (ST8Sia I, GD3 Synthase) in Xenopus. Rimoldi S, et al. Mol Cell Biochem, 2007 Jul. PMID 17333390
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in N-glycan processing IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within ganglioside biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within glycosphingolipid biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in oligosaccharide metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein glycosylation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
alpha-N-acetylneuraminide alpha-2,8-sialyltransferase
Names
GD3 synthase
SIAT8-A
ST8Sia I
alpha-2,8-sialyltransferase 8A
sialyltransferase 8A
sialyltransferase St8Sia I
sialytransferase St8Sia I
sialytransferase St8SiaI
NP_001003659.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003659.1 → NP_001003659.1  alpha-N-acetylneuraminide alpha-2,8-sialyltransferase

    See identical proteins and their annotated locations for NP_001003659.1

    Status: PROVISIONAL

    Source sequence(s)
    AY652775
    UniProtKB/Swiss-Prot
    Q6DNG6
    Related
    ENSXETP00000118412.1, ENSXETT00000111617.1
    Conserved Domains (1) summary
    pfam00777
    Location:80 → 332
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    89548019..89550925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DNG6.2 GenPept UniProtKB/Swiss-Prot:Q6DNG6

Gene LinkOut

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