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MGC89178.L MGC89178 protein L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444821, updated on 4-Nov-2024

Summary

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Official Symbol
MGC89178.L
Official Full Name
MGC89178 protein L homeolog
Primary source
Xenbase:XB-GENE-5800868
Locus tag
XELAEV_18045357mg
See related
EnsemblRapid:ENSXLAG00005019719 AllianceGenome:Xenbase:XB-GENE-5800868
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable calcium ion binding activity. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See MGC89178.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (112244536..112267448)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (101646277..101669199)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene protein disulfide isomerase-like, testis expressed L homeolog Neighboring gene uromodulin (uromucoid, Tamm-Horsfall glycoprotein), gene 3 L homeolog Neighboring gene ERI1 exoribonuclease 2-like Neighboring gene hemicentin-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84399

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC444821

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092923.1 → NP_001086392.1  uncharacterized protein LOC444821

    See identical proteins and their annotated locations for NP_001086392.1

    Status: PREDICTED

    Source sequence(s)
    BC075224
    UniProtKB/TrEMBL
    A0A974C0J7, Q6DJF5
    Related
    ENSXLAP00005057912.1, ENSXLAT00005059266.1
    Conserved Domains (2) summary
    cd00054
    Location:307 → 340
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam12947
    Location:358 → 389
    EGF_3; EGF domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    112244536..112267448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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