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dnajb11.S DnaJ heat shock protein family (Hsp40) member B11 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444772, updated on 4-Nov-2024

Summary

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Official Symbol
dnajb11.S
Official Full Name
DnaJ heat shock protein family (Hsp40) member B11 S homeolog
Primary source
Xenbase:XB-GENE-5742189
Locus tag
XELAEV_18047423mg
See related
EnsemblRapid:ENSXLAG00005015370 AllianceGenome:Xenbase:XB-GENE-5742189
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
EDJ; dnajb11
Summary
Predicted to enable misfolded protein binding activity and unfolded protein binding activity. Predicted to act upstream of or within protein folding. Predicted to be located in endoplasmic reticulum lumen. Human ortholog(s) of this gene implicated in polycystic kidney disease 6. Orthologous to human DNAJB11 (DnaJ heat shock protein family (Hsp40) member B11). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See dnajb11.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (82725298..82739679, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (76030141..76044522, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene caveolae associated protein 2 S homeolog Neighboring gene transmembrane protein with EGF like and two follistatin like domains 2 S homeolog Neighboring gene zinc finger CCCH-type containing 15 S homeolog Neighboring gene splicing factor 3b subunit 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81924

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables misfolded protein binding IEA
Inferred from Electronic Annotation
more info
  
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein folding IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein maturation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum lumen IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DnaJ heat shock protein family (Hsp40) member B11 S homeolog
Names
DnaJ (Hsp40) homolog, subfamily B, member 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092874.1 → NP_001086343.1  DnaJ heat shock protein family (Hsp40) member B11 S homeolog

    See identical proteins and their annotated locations for NP_001086343.1

    Status: PROVISIONAL

    Source sequence(s)
    BC075137
    UniProtKB/TrEMBL
    A0A974H1W6, Q6DJN8
    Related
    ENSXLAP00005045213.1, ENSXLAT00005046310.1
    Conserved Domains (3) summary
    cd10747
    Location:134 → 331
    DnaJ_C; C-terminal substrate binding domain of DnaJ and HSP40
    COG0484
    Location:26 → 346
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    pfam00226
    Location:27 → 89
    DnaJ; DnaJ domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    82725298..82739679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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