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emp1.L epithelial membrane protein 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444747, updated on 4-Nov-2024

Summary

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Official Symbol
emp1.L
Official Full Name
epithelial membrane protein 1 L homeolog
Primary source
Xenbase:XB-GENE-6078287
Locus tag
XELAEV_18023508mg
See related
EnsemblRapid:ENSXLAG00005013876 AllianceGenome:Xenbase:XB-GENE-6078287
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
emp1
Summary
Predicted to be located in plasma membrane. Orthologous to human EMP1 (epithelial membrane protein 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See emp1.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (111045274..111065180, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (105793717..105813680, complement)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 234 member B L homeolog Neighboring gene coagulation factor VIII L homeolog Neighboring gene germ cell associated 1 L homeolog Neighboring gene uncharacterized LOC108714460 Neighboring gene glutamate receptor, ionotropic, N-methyl D-aspartate 2B L homeolog Neighboring gene uncharacterized LOC121403086

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84779

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
epithelial membrane protein 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092849.1 → NP_001086318.1  epithelial membrane protein 1 L homeolog

    See identical proteins and their annotated locations for NP_001086318.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074477
    UniProtKB/TrEMBL
    A0A974D6R7, Q6DKA3
    Related
    ENSXLAP00005041013.1, ENSXLAT00005041938.1
    Conserved Domains (1) summary
    cl21598
    Location:1 → 157
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    111045274..111065180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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