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cops5.S COP9 signalosome subunit 5 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444720, updated on 17-Aug-2024

Summary

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Official Symbol
cops5.S
Official Full Name
COP9 signalosome subunit 5 S homeolog
Primary source
Xenbase:XB-GENE-952833
Locus tag
XELAEV_18033779mg
See related
EnsemblRapid:ENSXLAG00005030957
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
csn5; cops5
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Genomic context

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Location:
chromosome: 6S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (104815342..104823872, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (96145417..96152242, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene transcription factor 24 Neighboring gene protein phosphatase 1 regulatory subunit 42-like Neighboring gene ADP ribosylation factor guanine nucleotide exchange factor 1 S homeolog Neighboring gene uncharacterized LOC121395162 Neighboring gene carboxypeptidase A6 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84682

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables deNEDDylase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of apoptotic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within positive regulation of DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within protein deneddylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of COP9 signalosome IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in synapse IEA
Inferred from Electronic Annotation
more info
  
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
COP9 signalosome complex subunit 5
Names
COP9 constitutive photomorphogenic homolog subunit 5
signalosome subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092822.1 → NP_001086291.1  COP9 signalosome complex subunit 5

    See identical proteins and their annotated locations for NP_001086291.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074434
    UniProtKB/Swiss-Prot
    Q6GLM9
    UniProtKB/TrEMBL
    A0A974HEQ2
    Related
    ENSXLAP00005092712.1, ENSXLAT00005094395.1
    Conserved Domains (1) summary
    cd08069
    Location:42 → 312
    MPN_RPN11_CSN5; Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    104815342..104823872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GLM9.1 GenPept UniProtKB/Swiss-Prot:Q6GLM9

Gene LinkOut

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