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syt11.S synaptotagmin 11 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444672, updated on 4-Nov-2024

Summary

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Official Symbol
syt11.S
Official Full Name
synaptotagmin 11 S homeolog
Primary source
Xenbase:XB-GENE-6254595
Locus tag
XELAEV_18043027mg
See related
EnsemblRapid:ENSXLAG00005007219 AllianceGenome:Xenbase:XB-GENE-6254595
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
syt11; syt12
Summary
Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to act upstream of or within several processes, including calcium ion-regulated exocytosis of neurotransmitter; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in several cellular components, including axon; exocytic vesicle; and synapse. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See syt11.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (103686686..103700521)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (98696664..98707530)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene ash1 (absent, small, or homeotic)-like S homeolog Neighboring gene gon-4-like S homeolog Neighboring gene provisional ortholog of immunoglobulin superfamily member 8 S homeolog Neighboring gene potassium inwardly rectifying channel subfamily J member 9 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84272

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
  
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
  
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylserine binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within calcium ion-regulated exocytosis of neurotransmitter IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cellular response to calcium ion IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of calcium ion-dependent exocytosis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of dopamine secretion IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle fusion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
  
located_in exocytic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in synapse IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
synaptotagmin 11 S homeolog
Names
synaptotagmin XI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092774.1 → NP_001086243.1  synaptotagmin 11 S homeolog

    See identical proteins and their annotated locations for NP_001086243.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074369
    UniProtKB/TrEMBL
    A0A974H9C7, Q6GLT4
    Related
    ENSXLAP00005020775.1, ENSXLAT00005021350.1
    Conserved Domains (2) summary
    cd08388
    Location:156 → 282
    C2A_Synaptotagmin-4-11; C2A domain first repeat present in Synaptotagmins 4 and 11
    cd08404
    Location:291 → 428
    C2B_Synaptotagmin-4; C2 domain second repeat present in Synaptotagmin 4

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    103686686..103700521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041574222.1 → XP_041430156.1  synaptotagmin 11 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974H9C7, Q6GLT4
    Conserved Domains (2) summary
    cd08388
    Location:156 → 282
    C2A_Synaptotagmin-4-11; C2A domain first repeat present in Synaptotagmins 4 and 11
    cd08404
    Location:291 → 428
    C2B_Synaptotagmin-4; C2 domain second repeat present in Synaptotagmin 4

  2. XM_041574223.1 → XP_041430157.1  synaptotagmin 11 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1LKW1, A0A974H9C7
    Related
    ENSXLAP00005020765.1, ENSXLAT00005021339.1
    Conserved Domains (2) summary
    cd08388
    Location:156 → 282
    C2A_Synaptotagmin-4-11; C2A domain first repeat present in Synaptotagmins 4 and 11
    cd08404
    Location:291 → 427
    C2B_Synaptotagmin-4; C2 domain second repeat present in Synaptotagmin 4

RNA

  1. XR_005963732.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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