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fahd2a.L fumarylacetoacetate hydrolase domain containing 2A L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444668, updated on 17-Aug-2024

Summary

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Official Symbol
fahd2a.L
Official Full Name
fumarylacetoacetate hydrolase domain containing 2A L homeolog
Primary source
Xenbase:XB-GENE-964035
Locus tag
XELAEV_18018571mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fahd2; fahd2a
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Genomic context

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See fahd2a.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (132540853..132559332)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (117167309..117185356)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene prominin 2 L homeolog Neighboring gene potassium voltage-gated channel interacting protein 3 L homeolog Neighboring gene glycerol-3-phosphate acyltransferase 2, mitochondrial L homeolog Neighboring gene adrenoceptor alpha 2B L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84259

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxaloacetate tautomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxaloacetate tautomerase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within oxaloacetate metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
oxaloacetate tautomerase fahd2, mitochondrial; fumarylacetoacetate hydrolase domain-containing protein 2
Names
Fumarylacetoacetate hydrolase domain-containing protein 2
NP_001086239.1
XP_018106475.1
XP_018106476.1
XP_041441034.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092770.1 → NP_001086239.1  oxaloacetate tautomerase fahd2, mitochondrial

    See identical proteins and their annotated locations for NP_001086239.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074365
    UniProtKB/Swiss-Prot
    Q6GLT8
    Conserved Domains (2) summary
    TIGR02303
    Location:80 → 319
    HpaG-C-term; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
    pfam01557
    Location:114 → 318
    FAA_hydrolase; Fumarylacetoacetate (FAA) hydrolase family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    132540853..132559332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041585100.1 → XP_041441034.1  fumarylacetoacetate hydrolase domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A1L8H1M1, A0A974HU35
    Conserved Domains (1) summary
    COG0179
    Location:80 → 319
    MhpD; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport and catabolism]

  2. XM_018250986.2 → XP_018106475.1  fumarylacetoacetate hydrolase domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A1L8H1M1, A0A974HU35
    Conserved Domains (1) summary
    COG0179
    Location:80 → 319
    MhpD; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport and catabolism]

  3. XM_018250987.2 → XP_018106476.1  fumarylacetoacetate hydrolase domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A1L8H1M1, A0A974HU35
    Conserved Domains (1) summary
    COG0179
    Location:80 → 319
    MhpD; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport and catabolism]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GLT8.1 GenPept UniProtKB/Swiss-Prot:Q6GLT8

Gene LinkOut

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