ccn5.S cellular communication network factor 5 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: ccn5.S
Official Full Name: cellular communication network factor 5 S homeolog
Primary source: Xenbase:XB-GENE-876342
Locus tag: XELAEV_18046135mg
See related: EnsemblRapid:ENSXLAG00005036602
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: wisp2; wisp2.S
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Genomic context

Location:: chromosome: 9_10S

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10S	NC_054388.1 (7940478..7949356)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10S	NC_030741.1 (7815526..7824378)

Chromosome 9_10S - NC_054388.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables heparin binding	IEA Inferred from Electronic Annotation more info
enables integrin binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell adhesion	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within signal transduction	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular matrix	IEA Inferred from Electronic Annotation more info
located_in extracellular region	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: cellular communication network factor 5 S homeolog

Names: WNT1 inducible signaling pathway protein 2 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001092757.1 → NP_001086226.1 cellular communication network factor 5 S homeolog precursor

See identical proteins and their annotated locations for NP_001086226.1

Status: PROVISIONAL

Source sequence(s)

BC074349

UniProtKB/TrEMBL

A0A974BSR3, Q6GLV2

Conserved Domains (2) summary

smart00214
Location:98 → 157

VWC; von Willebrand factor (vWF) type C domain

pfam00219
Location:22 → 65

IGFBP; Insulin-like growth factor binding protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

7940478..7949356

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041577766.1 → XP_041433700.1 cellular communication network factor 5 S homeolog isoform X1

UniProtKB/TrEMBL

A0A1L8ELA8, A0A974BSU0

Related

ENSXLAP00005109561.1, ENSXLAT00005111763.1

Conserved Domains (3) summary

smart00214
Location:98 → 156

VWC; von Willebrand factor (vWF) type C domain

pfam00219
Location:22 → 68

IGFBP; Insulin-like growth factor binding protein

pfam19035
Location:192 → 235

TSP1_CCN; CCN3 Nov like TSP1 domain