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pcbp1.S poly(rC) binding protein 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444641, updated on 17-Aug-2024

Summary

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Official Symbol
pcbp1.S
Official Full Name
poly(rC) binding protein 1 S homeolog
Primary source
Xenbase:XB-GENE-949150
Locus tag
XELAEV_18047251mg
See related
EnsemblRapid:ENSXLAG00005035325
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See pcbp1.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (71880617..71920816)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (65235264..65275577)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene collagen type XVIII alpha 1 S homeolog Neighboring gene solute carrier family 19 (folate transporter), member 1 L homeolog Neighboring gene collagen, type VI, alpha 1 S homeolog Neighboring gene collagen, type VI, alpha 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of RNA metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
poly(rC) binding protein 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092743.1 → NP_001086212.1  poly(rC) binding protein 1 S homeolog

    See identical proteins and their annotated locations for NP_001086212.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074333
    UniProtKB/TrEMBL
    Q6GLW4
    Related
    ENSXLAP00005105823.1, ENSXLAT00005107894.1
    Conserved Domains (1) summary
    cd02396
    Location:99 → 163
    PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    71880617..71920816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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