U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cavin2.S caveolae associated protein 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444619, updated on 4-Nov-2024

Summary

Official Symbol
cavin2.S
Official Full Name
caveolae associated protein 2 S homeolog
Primary source
Xenbase:XB-GENE-6254614
Locus tag
XELAEV_18047420mg
See related
EnsemblRapid:ENSXLAG00005015347 AllianceGenome:Xenbase:XB-GENE-6254614
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sdr; sdpr; sdpr.S; cavin-2
Summary
Predicted to enable protein kinase C binding activity. Predicted to be located in caveola and cytoplasm. Orthologous to human CAVIN2 (caveolae associated protein 2). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See cavin2.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (82651109..82666206)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (75955669..75970873)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene glutaminase S homeolog Neighboring gene signal transducer and activator of transcription 1 S homeolog Neighboring gene transmembrane protein with EGF like and two follistatin like domains 2 S homeolog Neighboring gene DnaJ heat shock protein family (Hsp40) member B11 S homeolog

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC84112

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables protein kinase C binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in caveola IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
caveolae associated protein 2 S homeolog
Names
serum deprivation response S homeolog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092721.1NP_001086190.1  caveolae associated protein 2 S homeolog

    See identical proteins and their annotated locations for NP_001086190.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074306
    UniProtKB/TrEMBL
    A0A974H1K0, Q6GLY7
    Related
    ENSXLAP00005044955.1, ENSXLAT00005046054.1
    Conserved Domains (1) summary
    pfam15237
    Location:53278
    PTRF_SDPR; PTRF/SDPR family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    82651109..82666206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)