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lsamp.L limbic system associated membrane protein L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444610, updated on 4-Nov-2024

Summary

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Official Symbol
lsamp.L
Official Full Name
limbic system associated membrane protein L homeolog
Primary source
Xenbase:XB-GENE-5759202
Locus tag
XELAEV_18011307mg
See related
EnsemblRapid:ENSXLAG00005031024 AllianceGenome:Xenbase:XB-GENE-5759202
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
2G9; lamp; lsamp; iglon3
Summary
Predicted to act upstream of or within cell adhesion. Predicted to be located in plasma membrane and side of membrane. Orthologous to human LSAMP (limbic system associated membrane protein). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See lsamp.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (3917032..5151692, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (3729027..4082531, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 20 L homeolog Neighboring gene growth associated protein 43 L homeolog Neighboring gene U2 spliceosomal RNA Neighboring gene immunoglobulin superfamily member 11 Neighboring gene uroplakin 1B L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84094

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in side of membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
limbic system associated membrane protein L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092712.1 → NP_001086181.1  limbic system associated membrane protein L homeolog precursor

    See identical proteins and their annotated locations for NP_001086181.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074296
    UniProtKB/TrEMBL
    A0A974HV94, Q6GLZ7
    Related
    ENSXLAP00005093058.1, ENSXLAT00005094741.1
    Conserved Domains (4) summary
    smart00408
    Location:232 → 297
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:228 → 307
    IG_like; Immunoglobulin like
    pfam07679
    Location:132 → 215
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:38 → 128
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    3917032..5151692 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041581004.1 → XP_041436938.1  limbic system associated membrane protein L homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1M5H6, A0A974HV94
    Conserved Domains (3) summary
    smart00409
    Location:135 → 212
    IG; Immunoglobulin
    smart00410
    Location:225 → 306
    IG_like; Immunoglobulin like
    cd00096
    Location:232 → 236
    Ig; Ig strand B [structural motif]

  2. XM_041581005.1 → XP_041436939.1  limbic system associated membrane protein L homeolog isoform X5

    UniProtKB/TrEMBL
    A0A8J1M5H9, A0A974HV94
    Conserved Domains (3) summary
    smart00409
    Location:138 → 215
    IG; Immunoglobulin
    smart00410
    Location:228 → 309
    IG_like; Immunoglobulin like
    cd00096
    Location:235 → 239
    Ig; Ig strand B [structural motif]

  3. XM_041581001.1 → XP_041436935.1  limbic system associated membrane protein L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1M7B4, A0A974HV94
    Conserved Domains (3) summary
    smart00409
    Location:138 → 215
    IG; Immunoglobulin
    smart00410
    Location:228 → 309
    IG_like; Immunoglobulin like
    cd00096
    Location:235 → 239
    Ig; Ig strand B [structural motif]

  4. XM_041581006.1 → XP_041436940.1  limbic system associated membrane protein L homeolog isoform X6

    UniProtKB/TrEMBL
    A0A8J1M7B9, A0A974HV94
    Related
    ENSXLAP00005093092.1, ENSXLAT00005094775.1
    Conserved Domains (3) summary
    smart00409
    Location:138 → 215
    IG; Immunoglobulin
    smart00410
    Location:228 → 309
    IG_like; Immunoglobulin like
    cd00096
    Location:235 → 239
    Ig; Ig strand B [structural motif]

  5. XM_041581002.1 → XP_041436936.1  limbic system associated membrane protein L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1M6J7, A0A974HV94
    Conserved Domains (3) summary
    smart00409
    Location:138 → 215
    IG; Immunoglobulin
    smart00410
    Location:228 → 309
    IG_like; Immunoglobulin like
    cd00096
    Location:235 → 239
    Ig; Ig strand B [structural motif]

  6. XM_041581003.1 → XP_041436937.1  limbic system associated membrane protein L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1M5G8, A0A974HV94
    Related
    ENSXLAP00005093004.1, ENSXLAT00005094687.1
    Conserved Domains (3) summary
    smart00408
    Location:232 → 297
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:138 → 215
    IG; Immunoglobulin
    cd00096
    Location:235 → 239
    Ig; Ig strand B [structural motif]

  7. XM_041581007.1 → XP_041436941.1  limbic system associated membrane protein L homeolog isoform X7

    UniProtKB/TrEMBL
    A0A8J1M6K2, A0A974HV94
    Related
    ENSXLAP00005093206.1, ENSXLAT00005094890.1
    Conserved Domains (3) summary
    smart00409
    Location:138 → 215
    IG; Immunoglobulin
    smart00410
    Location:228 → 310
    IG_like; Immunoglobulin like
    cd00096
    Location:235 → 239
    Ig; Ig strand B [structural motif]

  8. XM_041581008.1 → XP_041436942.1  limbic system associated membrane protein L homeolog isoform X8

    UniProtKB/TrEMBL
    A0A8J1M5H3, A0A974HV94
    Related
    ENSXLAP00005093250.1, ENSXLAT00005094934.1
    Conserved Domains (3) summary
    smart00409
    Location:138 → 215
    IG; Immunoglobulin
    smart00410
    Location:228 → 309
    IG_like; Immunoglobulin like
    cd00096
    Location:235 → 239
    Ig; Ig strand B [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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