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cacng5.L calcium channel, voltage-dependent, gamma subunit 5 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444605, updated on 18-Sep-2024

Summary

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Official Symbol
cacng5.L
Official Full Name
calcium channel, voltage-dependent, gamma subunit 5 L homeolog
Primary source
Xenbase:XB-GENE-6254621
Locus tag
XELAEV_18044254mg
See related
EnsemblRapid:ENSXLAG00005015725
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cacng5
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Genomic context

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See cacng5.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (54023806..54042824)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (43469450..43488592)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene apolipoprotein H L homeolog Neighboring gene protein kinase C, alpha L homeolog Neighboring gene calcium channel, voltage-dependent, gamma subunit 4 L homeolog Neighboring gene calcium channel, voltage-dependent, gamma subunit 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84082

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables channel regulator activity IEA
Inferred from Electronic Annotation
more info
  
enables voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within calcium ion transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within neurotransmitter receptor internalization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within neurotransmitter receptor transport, postsynaptic endosome to lysosome IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of synaptic transmission, glutamatergic IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within postsynaptic neurotransmitter receptor diffusion trapping IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of AMPA receptor activity IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within transmission of nerve impulse IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of AMPA glutamate receptor complex IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in postsynaptic density membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
calcium channel, voltage-dependent, gamma subunit 5 L homeolog
Names
TARP gamma-5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092707.1 → NP_001086176.1  calcium channel, voltage-dependent, gamma subunit 5 L homeolog

    See identical proteins and their annotated locations for NP_001086176.1

    Status: PROVISIONAL

    Source sequence(s)
    BC074291
    UniProtKB/TrEMBL
    A0A974BU52, Q6GM02
    Related
    ENSXLAP00005046212.1, ENSXLAT00005047311.1
    Conserved Domains (1) summary
    cl21598
    Location:18 → 195
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    54023806..54042824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041575640.1 → XP_041431574.1  calcium channel, voltage-dependent, gamma subunit 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LQP4, A0A974BYN7
    Conserved Domains (1) summary
    cl21598
    Location:68 → 247
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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