copg2.S COPI coat complex subunit gamma 2 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: copg2.S
Official Full Name: COPI coat complex subunit gamma 2 S homeolog
Primary source: Xenbase:XB-GENE-941269
Locus tag: XELAEV_18020889mg
See related: EnsemblRapid:ENSXLAG00005008003 AllianceGenome:Xenbase:XB-GENE-941269
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: 2-cop; copg2
Summary: Predicted to enable structural molecule activity. Predicted to act upstream of or within Golgi vesicle transport; organelle transport along microtubule; and protein transport. Predicted to be located in bounding membrane of organelle; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Predicted to be part of COPI vesicle coat. Orthologous to human COPG2 (COPI coat complex subunit gamma 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 3S

Exon count:: 25

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	3S	NC_054376.1 (65132817..65162159, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	3S	NC_030729.1 (63715817..63745279, complement)

Chromosome 3S - NC_054376.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables structural molecule activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within intra-Golgi vesicle-mediated transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within intracellular protein transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within organelle transport along microtubule	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein secretion	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of COPI vesicle coat	IEA Inferred from Electronic Annotation more info
located_in COPI-coated vesicle membrane	IEA Inferred from Electronic Annotation more info
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasmic vesicle	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum-Golgi intermediate compartment	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: coatomer subunit gamma-2

Names: coatomer protein complex subunit gamma 2 S homeolog; coatomer protein complex, subunit gamma 2; gamma-2-COP; gamma-2-coat protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001092648.1 → NP_001086117.1 coatomer subunit gamma-2

See identical proteins and their annotated locations for NP_001086117.1

Status: PROVISIONAL

Source sequence(s)

BC074209

UniProtKB/Swiss-Prot

Q6DKD7

UniProtKB/TrEMBL

A0A974DAL1

Related

ENSXLAP00005022929.1, ENSXLAT00005023631.1

Conserved Domains (5) summary

COG5240
Location:7 → 867

SEC21; Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

pfam08752
Location:614 → 757

COP-gamma_platf; Coatomer gamma subunit appendage platform subdomain

pfam11701
Location:325 → 497

UNC45-central; Myosin-binding striated muscle assembly central

pfam16381
Location:759 → 871

Coatomer_g_Cpla; Coatomer subunit gamma-1 C-terminal appendage platform

sd00044
Location:398 → 423

HEAT; HEAT repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

65132817..65162159 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041587627.1 → XP_041443561.1 coatomer subunit gamma-2 isoform X1

UniProtKB/TrEMBL

A0A8J1MQ50, A0A974DAL1

Conserved Domains (2) summary

COG5240
Location:2 → 804

SEC21; Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

sd00044
Location:335 → 360

HEAT; HEAT repeat [structural motif]