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zdhhc4.L zinc finger DHHC-type containing 4 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444453, updated on 4-Nov-2024

Summary

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Official Symbol
zdhhc4.L
Official Full Name
zinc finger DHHC-type containing 4 L homeolog
Primary source
Xenbase:XB-GENE-981757
Locus tag
XELAEV_18045486mg
See related
EnsemblRapid:ENSXLAG00005018582 AllianceGenome:Xenbase:XB-GENE-981757
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
zdhhc4
Summary
Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to act upstream of or within peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and membrane. Orthologous to human ZDHHC4 (zinc finger DHHC-type palmitoyltransferase 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See zdhhc4.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (118189144..118197232, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (107590548..107598687, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene phosphoglycolate phosphatase L homeolog Neighboring gene E4F transcription factor 1 L homeolog Neighboring gene glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein L homeolog Neighboring gene solute carrier family 5 (sodium/inositol cotransporter), member 11 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83658

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein-cysteine S-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within peptidyl-L-cysteine S-palmitoylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger DHHC-type containing 4 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092555.1 → NP_001086024.1  zinc finger DHHC-type containing 4 L homeolog

    See identical proteins and their annotated locations for NP_001086024.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073715
    UniProtKB/TrEMBL
    A0A974H497, A0A974H4B5, Q6GN07
    Related
    ENSXLAP00005054902.1, ENSXLAT00005056090.1
    Conserved Domains (1) summary
    pfam01529
    Location:143 → 292
    zf-DHHC; DHHC palmitoyltransferase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    118189144..118197232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018234366.2 → XP_018089855.1  zinc finger DHHC-type containing 4 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974H497, A0A974H4B5, Q6GN07
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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