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tbc1d4.L TBC1 domain family member 4 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444449, updated on 17-Aug-2024

Summary

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Official Symbol
tbc1d4.L
Official Full Name
TBC1 domain family member 4 L homeolog
Primary source
Xenbase:XB-GENE-980843
Locus tag
XELAEV_18013197mg
See related
EnsemblRapid:ENSXLAG00005000509
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tbc1d4
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Genomic context

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See tbc1d4.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
21
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (132319879..132395938)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (126442518..126518587)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene ubiquitin C-terminal hydrolase L3 L homeolog Neighboring gene COMM domain containing 6 L homeolog Neighboring gene KLF transcription factor 12 L homeolog Neighboring gene KLF transcription factor 5 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC83651

General protein information

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Preferred Names
TBC1 domain family member 4 L homeolog
Names
TBC1 domain family, member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092551.1 → NP_001086020.1  TBC1 domain family member 4 L homeolog

    See identical proteins and their annotated locations for NP_001086020.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073710
    UniProtKB/TrEMBL
    Q6GN12
    Conserved Domains (4) summary
    smart00164
    Location:845 → 1059
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cd01269
    Location:177 → 424
    PTB_TBC1D1_like; TBC1 domain family member 1 and related proteins Phosphotyrosine-binding (PTB) domain
    pfam11830
    Location:739 → 792
    DUF3350; Domain of unknown function (DUF3350)
    cl17171
    Location:27 → 174
    PH-like; Pleckstrin homology-like domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    132319879..132395938
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041580996.1 → XP_041436930.1  TBC1 domain family member 4 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1M7A9
    Conserved Domains (3) summary
    smart00164
    Location:896 → 1110
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cd01269
    Location:177 → 424
    PTB_TBC1D1_like; TBC1 domain family member 1 and related proteins Phosphotyrosine-binding (PTB) domain
    cl17171
    Location:27 → 174
    PH-like; Pleckstrin homology-like domain

  2. XM_018245073.2 → XP_018100562.1  TBC1 domain family member 4 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UER4
    Related
    ENSXLAP00005001429.1, ENSXLAT00005001469.1

  3. XM_041580997.1 → XP_041436931.1  TBC1 domain family member 4 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1M6J3
    Conserved Domains (3) summary
    smart00164
    Location:846 → 1060
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    cd01269
    Location:177 → 424
    PTB_TBC1D1_like; TBC1 domain family member 1 and related proteins Phosphotyrosine-binding (PTB) domain
    cl17171
    Location:27 → 174
    PH-like; Pleckstrin homology-like domain

  4. XM_018245074.2 → XP_018100563.1  TBC1 domain family member 4 L homeolog isoform X4

    UniProtKB/TrEMBL
    A0A1L8HHL4, A0A974DR93
    Related
    ENSXLAP00005001430.1, ENSXLAT00005001470.1
Nucleotide Protein Strain
Heading Accession and Version

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