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nt5dc1.L 5'-nucleotidase domain containing 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444445, updated on 3-Jul-2024

Summary

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Official Symbol
nt5dc1.L
Official Full Name
5'-nucleotidase domain containing 1 L homeolog
Primary source
Xenbase:XB-GENE-945737
Locus tag
XELAEV_180271521mg
See related
EnsemblRapid:ENSXLAG00005034032
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
nt5dc1
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Genomic context

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See nt5dc1.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (78266062..78405016, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (76046217..76185099, complement)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 3L L homeolog Neighboring gene calcium homeostasis modulator family member 6 L homeolog Neighboring gene dermatan sulfate epimerase L homeolog Neighboring gene collagen, type X, alpha 1 L homeolog Neighboring gene uncharacterized LOC108716817 Neighboring gene fyn related Src family tyrosine kinase L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83639

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
5'-nucleotidase domain containing 1 L homeolog; 5'-nucleotidase domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092547.1 → NP_001086016.1  5'-nucleotidase domain containing 1 L homeolog

    See identical proteins and their annotated locations for NP_001086016.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073705
    UniProtKB/TrEMBL
    Q6GN17
    Related
    ENSXLAP00005101649.1, ENSXLAT00005103631.1
    Conserved Domains (1) summary
    cl21460
    Location:3 → 340
    HAD_like; Haloacid Dehalogenase-like Hydrolases

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    78266062..78405016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018261903.2 → XP_018117392.1  5'-nucleotidase domain containing 1 isoform X1

    UniProtKB/TrEMBL
    Q6GN17
    Related
    ENSXLAP00005101691.1, ENSXLAT00005103678.1
    Conserved Domains (1) summary
    cl21460
    Location:3 → 340
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  2. XM_041562194.1 → XP_041418128.1  5'-nucleotidase domain containing 1 isoform X1

    UniProtKB/TrEMBL
    Q6GN17
    Conserved Domains (1) summary
    cl21460
    Location:3 → 340
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  3. XM_041562193.1 → XP_041418127.1  5'-nucleotidase domain containing 1 isoform X1

    UniProtKB/TrEMBL
    Q6GN17
    Conserved Domains (1) summary
    cl21460
    Location:3 → 340
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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