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chst6.L carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444431, updated on 4-Nov-2024

Summary

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Official Symbol
chst6.L
Official Full Name
carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 L homeolog
Primary source
Xenbase:XB-GENE-960886
Locus tag
XELAEV_18022668mg
See related
EnsemblRapid:ENSXLAG00005026239 AllianceGenome:Xenbase:XB-GENE-960886
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
chst6; mcdc1; chst5.1
Summary
Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity. Predicted to act upstream of or within N-acetylglucosamine metabolic process; carbohydrate metabolic process; and sulfur compound metabolic process. Predicted to be located in Golgi membrane and trans-Golgi network. Human ortholog(s) of this gene implicated in macular corneal dystrophy. Orthologous to human CHST6 (carbohydrate sulfotransferase 6). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See chst6.L in Genome Data Viewer
Location:
chromosome: 4L
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (58232020..58251181, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (53020048..53039209, complement)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene short chain dehydrogenase/reductase family 42E, member 1 L homeolog Neighboring gene phospholipase C gamma 2 L homeolog Neighboring gene transmembrane protein 231-like Neighboring gene GABA(A) receptor-associated protein like 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83048

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sulfur compound metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092533.1 → NP_001086002.1  carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 L homeolog

    See identical proteins and their annotated locations for NP_001086002.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073681
    UniProtKB/TrEMBL
    A0A974HNM0, Q6GN39
    Related
    ENSXLAP00005077977.1, ENSXLAT00005079568.1
    Conserved Domains (1) summary
    cl21551
    Location:161 → 357
    Sulfotransfer_1; Sulfotransferase domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    58232020..58251181 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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