U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ap5z1.S adaptor related protein complex 5 subunit zeta 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444387, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
ap5z1.S
Official Full Name
adaptor related protein complex 5 subunit zeta 1 S homeolog
Primary source
Xenbase:XB-GENE-6255373
Locus tag
XELAEV_18032591mg
See related
AllianceGenome:Xenbase:XB-GENE-6255373
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ap5z1; kiaa0415
Summary
Predicted to be part of AP-5 adaptor complex. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia and hereditary spastic paraplegia 48. Orthologous to human AP5Z1 (adaptor related protein complex 5 subunit zeta 1). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ap5z1.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (287011..289961)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (289931..292881)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 239-like Neighboring gene protein HEG homolog 1-like Neighboring gene ATP binding cassette subfamily F member 2 S homeolog Neighboring gene chondroitin polymerizing factor 2 S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC82900

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
part_of AP-5 adaptor complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
adaptor related protein complex 5 subunit zeta 1 S homeolog
Names
adaptor related protein complex 5, zeta 1 subunit S homeolog
adaptor-related protein complex 5, zeta 1 subunit

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092489.1 → NP_001085958.1  adaptor related protein complex 5 subunit zeta 1 S homeolog

    See identical proteins and their annotated locations for NP_001085958.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073598
    UniProtKB/TrEMBL
    A0A974CHX2, Q6GNB6
    Conserved Domains (1) summary
    pfam14764
    Location:304 → 421
    SPG48; AP-5 complex subunit, vesicle trafficking

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    287011..289961
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.