zc4h2.L zinc finger, C4H2 domain containing L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: zc4h2.L
Official Full Name: zinc finger, C4H2 domain containing L homeolog
Primary source: Xenbase:XB-GENE-941222
Locus tag: XELAEV_18038726mg
See related: EnsemblRapid:ENSXLAG00005013302 AllianceGenome:Xenbase:XB-GENE-941222
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: zc4h2; hca127
Summary: Predicted to act upstream of or within positive regulation of neuron differentiation. Predicted to be located in nucleus. Is expressed in ectoderm and nervous system. Human ortholog(s) of this gene implicated in Miles-Carpenter syndrome. Orthologous to human ZC4H2 (zinc finger C4H2-type containing). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 8L

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8L	NC_054385.1 (37126571..37139220)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8L	NC_030738.1 (23942971..23955199)

Chromosome 8L - NC_054385.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within positive regulation of neuron differentiation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: zinc finger, C4H2 domain containing L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001092484.1 → NP_001085953.1 zinc finger, C4H2 domain containing L homeolog

See identical proteins and their annotated locations for NP_001085953.1

Status: PROVISIONAL

Source sequence(s)

BC073590

UniProtKB/TrEMBL

A0A974H7J9, Q6GNC4

Related

ENSXLAP00005039262.1, ENSXLAT00005040183.1

Conserved Domains (1) summary

pfam10146
Location:13 → 221

zf-C4H2; Zinc finger-containing protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

37126571..37139220

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041572033.1 → XP_041427967.1 zinc finger, C4H2 domain containing L homeolog isoform X1

UniProtKB/TrEMBL

A0A8J1LEK9

Conserved Domains (1) summary

TIGR02168
Location:5 → 132

SMC_prok_B; chromosome segregation protein SMC, common bacterial type