eaf1.L ELL associated factor 1 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: eaf1.L
Official Full Name: ELL associated factor 1 L homeolog
Primary source: Xenbase:XB-GENE-865427
Locus tag: XELAEV_18031115mg
See related: EnsemblRapid:ENSXLAG00005010112
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: eaf1
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Genomic context

Location:: chromosome: 6L

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	6L	NC_054381.1 (53838995..53846212, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	6L	NC_030734.1 (49569669..49592817, complement)

Chromosome 6L - NC_054381.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables transcription elongation factor activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within transcription elongation by RNA polymerase II	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of super elongation complex	IEA Inferred from Electronic Annotation more info
part_of transcription elongation factor complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ELL associated factor 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001092481.1 → NP_001085950.1 ELL associated factor 1 L homeolog

See identical proteins and their annotated locations for NP_001085950.1

Status: PROVISIONAL

Source sequence(s)

BC073583

UniProtKB/TrEMBL

A0A974CNP2, Q6GND1

Related

ENSXLAP00005029787.1, ENSXLAT00005030537.1

Conserved Domains (1) summary

pfam09816
Location:17 → 115

EAF; RNA polymerase II transcription elongation factor

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

53838995..53846212 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)