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znf250.L zinc finger protein 250 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444336, updated on 17-Aug-2024

Summary

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Official Symbol
znf250.L
Official Full Name
zinc finger protein 250 L homeolog
Primary source
Xenbase:XB-GENE-6255394
Locus tag
XELAEV_18030510mg
See related
EnsemblRapid:ENSXLAG00005036442
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
zfp647; znf250; znf647; znf250.S
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Genomic context

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See znf250.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (5278138..5290626)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (2862059..2874526)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 665-like L homeolog Neighboring gene uncharacterized LOC108718652 Neighboring gene zinc finger protein 852 L homeolog Neighboring gene zinc finger protein 577 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82760

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 250 L homeolog
Names
zinc finger protein 250 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092440.1 → NP_001085909.1  zinc finger protein 250 L homeolog

    See identical proteins and their annotated locations for NP_001085909.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073519
    UniProtKB/TrEMBL
    Q6GNJ1
    Related
    ENSXLAP00005109016.1, ENSXLAT00005111199.1
    Conserved Domains (5) summary
    cd07765
    Location:8 → 47
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    smart00349
    Location:8 → 61
    KRAB; krueppel associated box
    sd00017
    Location:332 → 352
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:155 → 177
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:169 → 194
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    5278138..5290626
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018266469.2 → XP_018121958.1  zinc finger protein 250 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0VMS1

  2. XM_018266471.2 → XP_018121960.1  zinc finger protein 250 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J0VER1

  3. XM_041565430.1 → XP_041421364.1  zinc finger protein 250 L homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1KYM8
    Conserved Domains (2) summary
    COG5189
    Location:262 → 347
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:269 → 289
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_018266470.2 → XP_018121959.1  zinc finger protein 250 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0VHJ1
    Related
    ENSXLAP00005109020.1, ENSXLAT00005111203.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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