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extl3.S exostosin like glycosyltransferase 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444275, updated on 17-Aug-2024

Summary

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Official Symbol
extl3.S
Official Full Name
exostosin like glycosyltransferase 3 S homeolog
Primary source
Xenbase:XB-GENE-17337768
Locus tag
XELAEV_18030210mg
See related
EnsemblRapid:ENSXLAG00005005282
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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Location:
chromosome: 5S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (138330039..138373856, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (131643204..131687395, complement)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene homeobox containing 1 S homeolog Neighboring gene integrator complex subunit 9 S homeolog Neighboring gene uncharacterized LOC121394326 Neighboring gene frizzled class receptor 3 S homeolog Neighboring gene uncharacterized LOC121394327 Neighboring gene serine/threonine kinase 35 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80904

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
exostosin like glycosyltransferase 3 S homeolog; exostosin-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    138330039..138373856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018264416.2 → XP_018119905.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A974CWU5, A0A974HIB2, Q6GNS9
    Related
    ENSXLAP00005015562.1, ENSXLAT00005015848.1

  2. XM_018264417.2 → XP_018119906.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A974CWU5, A0A974HIB2, Q6GNS9

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001092379.1: Suppressed sequence

    Description
    NM_001092379.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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