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cog7.L component of oligomeric golgi complex 7 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444259, updated on 4-Nov-2024

Summary

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Official Symbol
cog7.L
Official Full Name
component of oligomeric golgi complex 7 L homeolog
Primary source
Xenbase:XB-GENE-970842
Locus tag
XELAEV_18045379mg
See related
EnsemblRapid:ENSXLAG00005018348 AllianceGenome:Xenbase:XB-GENE-970842
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cog7
Summary
Predicted to act upstream of or within Golgi organization; intracellular protein transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIe. Orthologous to human COG7 (component of oligomeric golgi complex 7). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See cog7.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
21
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (114299023..114334070, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (103693206..103728361, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene sodium channel, non voltage gated 1 gamma subunit L homeolog Neighboring gene sodium channel, non voltage gated 1 beta subunit L homeolog Neighboring gene glutamyl-tRNA synthetase 2, mitochondrial L homeolog Neighboring gene ubiquitin family domain containing 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80865

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within Golgi organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
component of oligomeric golgi complex 7 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092363.1 → NP_001085832.1  component of oligomeric golgi complex 7 L homeolog

    See identical proteins and their annotated locations for NP_001085832.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073403
    UniProtKB/TrEMBL
    Q6GNU8
    Related
    ENSXLAP00005054209.1, ENSXLAT00005055383.1
    Conserved Domains (1) summary
    pfam10191
    Location:2 → 765
    COG7; Golgi complex component 7 (COG7)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    114299023..114334070 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018234340.2 → XP_018089829.1  component of oligomeric golgi complex 7 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8EY61, A0A974H4L8
    Related
    ENSXLAP00005054223.1, ENSXLAT00005055397.1
    Conserved Domains (1) summary
    pfam10191
    Location:2 → 765
    COG7; Golgi complex component 7 (COG7)

  2. XM_041575620.1 → XP_041431554.1  component of oligomeric golgi complex 7 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8EY61, A0A974H4L8
    Conserved Domains (1) summary
    pfam10191
    Location:2 → 765
    COG7; Golgi complex component 7 (COG7)

  3. XM_041575621.1 → XP_041431555.1  component of oligomeric golgi complex 7 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8EY61, A0A974H4L8
    Conserved Domains (1) summary
    pfam10191
    Location:2 → 765
    COG7; Golgi complex component 7 (COG7)
Nucleotide Protein Strain
Heading Accession and Version

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