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fnbp1.L formin binding protein 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444253, updated on 4-Nov-2024

Summary

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Official Symbol
fnbp1.L
Official Full Name
formin binding protein 1 L homeolog
Primary source
Xenbase:XB-GENE-1003124
Locus tag
XELAEV_18002786mg
See related
EnsemblRapid:ENSXLAG00005023343 AllianceGenome:Xenbase:XB-GENE-1003124
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fnbp1
Summary
Predicted to enable lipid binding activity. Predicted to act upstream of or within endocytosis and signal transduction. Predicted to be located in several cellular components, including cell cortex; clathrin-coated pit; and lysosome. Orthologous to human FNBP1 (formin binding protein 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See fnbp1.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (10109456..10219871, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694827.1 (60571..171234, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene chromosome 8 C9orf78 homolog L homeolog Neighboring gene ubiquitin specific peptidase 20 L homeolog Neighboring gene uncharacterized LOC108704473 Neighboring gene TBC1 domain family member 13 L homeolog Neighboring gene zyg-11 related, cell cycle regulator L homeolog Neighboring gene protein kinase N3 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80847

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within endocytosis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cell cortex IEA
Inferred from Electronic Annotation
more info
  
located_in clathrin-coated pit IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in lysosome IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
formin-binding protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092357.1 → NP_001085826.1  formin-binding protein 1 homolog

    See identical proteins and their annotated locations for NP_001085826.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073396
    UniProtKB/Swiss-Prot
    Q6GNV5
    UniProtKB/TrEMBL
    A0A974C2T6
    Related
    ENSXLAP00005069146.1, ENSXLAT00005070680.1
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:400 → 476
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cl17036
    Location:546 → 602
    SH3; Src Homology 3 domain superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    10109456..10219871 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041572012.1 → XP_041427946.1  formin-binding protein 1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LEW5, A0A974C2T6
    Related
    ENSXLAP00005069115.1, ENSXLAT00005070649.1
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:469 → 545
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:615 → 671
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17

  2. XM_041572018.1 → XP_041427952.1  formin-binding protein 1 homolog isoform X7

    UniProtKB/TrEMBL
    A0A8J1LEJ5, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:433 → 509
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:580 → 636
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17

  3. XM_041572013.1 → XP_041427947.1  formin-binding protein 1 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1LEJ0, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:463 → 539
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:610 → 666
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17

  4. XM_041572014.1 → XP_041427948.1  formin-binding protein 1 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1LEI3, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:443 → 519
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:590 → 646
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17

  5. XM_041572019.1 → XP_041427953.1  formin-binding protein 1 homolog isoform X8

    UniProtKB/TrEMBL
    A0A8J1LEI8, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:432 → 508
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:579 → 635
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17

  6. XM_041572020.1 → XP_041427954.1  formin-binding protein 1 homolog isoform X9

    UniProtKB/TrEMBL
    A0A8J1LG01, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:431 → 507
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:578 → 634
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17

  7. XM_041572016.1 → XP_041427950.1  formin-binding protein 1 homolog isoform X5

    UniProtKB/TrEMBL
    A0A8J1LGY6, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:437 → 513
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:584 → 640
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17

  8. XM_041572015.1 → XP_041427949.1  formin-binding protein 1 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1LFZ6, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:437 → 513
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:584 → 640
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17

  9. XM_041572022.1 → XP_041427956.1  formin-binding protein 1 homolog isoform X11

    UniProtKB/TrEMBL
    A0A8J1LEX5, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:426 → 502
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:573 → 629
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17

  10. XM_041572021.1 → XP_041427955.1  formin-binding protein 1 homolog isoform X10

    UniProtKB/TrEMBL
    A0A8J1LGY9, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:431 → 507
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:577 → 633
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17

  11. XM_041572017.1 → XP_041427951.1  formin-binding protein 1 homolog isoform X6

    UniProtKB/TrEMBL
    A0A8J1LEX0, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:437 → 513
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:583 → 639
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17

  12. XM_041572029.1 → XP_041427963.1  formin-binding protein 1 homolog isoform X18

    UniProtKB/TrEMBL
    A0A8J1LEJ7, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:339 → 415
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:486 → 542
    SH3; Src Homology 3 domain superfamily

  13. XM_041572028.1 → XP_041427962.1  formin-binding protein 1 homolog isoform X17

    UniProtKB/TrEMBL
    A0A8J1LEK4, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:344 → 420
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:491 → 547
    SH3; Src Homology 3 domain superfamily

  14. XM_041572027.1 → XP_041427961.1  formin-binding protein 1 homolog isoform X16

    UniProtKB/TrEMBL
    A0A8J1LEY0, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:350 → 426
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cl17036
    Location:497 → 553
    SH3; Src Homology 3 domain superfamily

  15. XM_041572026.1 → XP_041427960.1  formin-binding protein 1 homolog isoform X15

    UniProtKB/TrEMBL
    A0A8J1LGZ5, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:395 → 471
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:541 → 597
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17

  16. XM_041572023.1 → XP_041427957.1  formin-binding protein 1 homolog isoform X12

    UniProtKB/TrEMBL
    A0A8J1LEK0, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:405 → 481
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:552 → 608
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17

  17. XM_041572030.1 → XP_041427964.1  formin-binding protein 1 homolog isoform X19

    UniProtKB/TrEMBL
    A0A8J1LG10, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cl00087
    Location:339 → 415
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl17036
    Location:485 → 541
    SH3; Src Homology 3 domain superfamily

  18. XM_041572025.1 → XP_041427959.1  formin-binding protein 1 homolog isoform X14

    UniProtKB/TrEMBL
    A0A8J1LG05, A0A974C2T6
    Related
    ENSXLAP00005069050.1, ENSXLAT00005070584.1
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:400 → 476
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:546 → 602
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17

  19. XM_041572024.1 → XP_041427958.1  formin-binding protein 1 homolog isoform X13

    UniProtKB/TrEMBL
    A0A8J1LEJ2, A0A974C2T6
    Conserved Domains (3) summary
    cd07676
    Location:5 → 257
    F-BAR_FBP17; The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17
    cd11629
    Location:405 → 481
    HR1_FBP17; Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Formin Binding Protein 17
    cd12071
    Location:551 → 607
    SH3_FBP17; Src Homology 3 domain of Formin Binding Protein 17
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GNV5.1 GenPept UniProtKB/Swiss-Prot:Q6GNV5

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