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enc1.2.S ectodermal-neural cortex (with BTB-like domain), gene 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444245, updated on 4-Nov-2024

Summary

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Official Symbol
enc1.2.S
Official Full Name
ectodermal-neural cortex (with BTB-like domain), gene 2 S homeolog
Primary source
Xenbase:XB-GENE-17335135
Locus tag
XELAEV_18009867mg
See related
EnsemblRapid:ENSXLAG00005016495 AllianceGenome:Xenbase:XB-GENE-17335135
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
Xencr-1
Summary
Orthologous to human ENC1 (ectodermal-neural cortex 1). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See enc1.2.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (94034756..94041868, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (88746445..88753557, complement)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene BTB domain containing 2 S homeolog Neighboring gene Rho/Rac guanine nucleotide exchange factor 18 S homeolog Neighboring gene peroxisomal biogenesis factor 11 gamma S homeolog Neighboring gene beta-1,4-galactosyltransferase 1-like S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80829

General protein information

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Preferred Names
ectodermal-neural cortex (with BTB-like domain), gene 2 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092349.1 → NP_001085818.1  ectodermal-neural cortex (with BTB-like domain), gene 2 S homeolog

    See identical proteins and their annotated locations for NP_001085818.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073388
    UniProtKB/TrEMBL
    A0A974I0T9, Q6GNW3, Q7ZUA9
    Related
    ENSXLAP00005048582.1, ENSXLAT00005049717.1
    Conserved Domains (6) summary
    smart00612
    Location:388 → 439
    Kelch; Kelch domain
    PHA03098
    Location:48 → 574
    PHA03098; kelch-like protein; Provisional
    sd00038
    Location:329 → 373
    Kelch; KELCH repeat [structural motif]
    pfam00651
    Location:36 → 140
    BTB; BTB/POZ domain
    pfam01344
    Location:527 → 571
    Kelch_1; Kelch motif
    pfam07707
    Location:149 → 247
    BACK; BTB And C-terminal Kelch

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    94034756..94041868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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