stambp.S STAM binding protein S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: stambp.S
Official Full Name: STAM binding protein S homeolog
Primary source: Xenbase:XB-GENE-6255708
Locus tag: XELAEV_18020244mg
See related: EnsemblRapid:ENSXLAG00005018011 AllianceGenome:Xenbase:XB-GENE-6255708
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: amsh; stambp; stambpb; stambp-a; stambp-b
Summary: Predicted to enable K63-linked deubiquitinase activity and metal-dependent deubiquitinase activity. Predicted to act upstream of or within protein K63-linked deubiquitination. Predicted to be located in cleavage furrow and endosome. Orthologous to human STAMBP (STAM binding protein). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 3S

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	3S	NC_054376.1 (26184224..26200733, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	3S	NC_030729.1 (25160835..25177415, complement)

Chromosome 3S - NC_054376.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables K63-linked deubiquitinase activity	IEA Inferred from Electronic Annotation more info
enables metal-dependent deubiquitinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within protein K63-linked deubiquitination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cleavage furrow	IEA Inferred from Electronic Annotation more info
located_in endosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: STAM binding protein S homeolog

Names: STAM binding protein b

NP_001085786.2

EC 3.1.2.15

XP_018109745.1

EC 3.1.2.15

XP_018109746.1

EC 3.1.2.15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001092317.2 → NP_001085786.2 STAM binding protein S homeolog

Status: PROVISIONAL

Source sequence(s)

BJ060470, BQ383818, BQ400464, CA792378, CV115470, EB465049

UniProtKB/TrEMBL

A0A8J0PX08, A0A974D6M4

Related

ENSXLAP00005053179.1, ENSXLAT00005054351.1

Conserved Domains (2) summary

cd08066
Location:246 → 416

MPN_AMSH_like; Mov34/MPN/PAD-1 family

pfam08969
Location:13 → 115

USP8_dimer; USP8 dimerization domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

26184224..26200733 complement

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GenBank, FASTA, Sequence Viewer (Graphics)