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efhd1.L EF-hand domain family member D1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444200, updated on 17-Aug-2024

Summary

Official Symbol
efhd1.L
Official Full Name
EF-hand domain family member D1 L homeolog
Primary source
Xenbase:XB-GENE-6078832
Locus tag
XELAEV_18027843mg
See related
EnsemblRapid:ENSXLAG00005015923
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
efhd1
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Genomic context

Location:
chromosome: 5L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (135847250..135871353)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (124768485..124792598)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene nuclear body protein SP140 Neighboring gene selenocysteine lyase L homeolog Neighboring gene autoimmune regulator L homeolog Neighboring gene S-antigen; retina and pineal gland (arrestin) L homeolog Neighboring gene small Cajal body-specific RNA 6 Neighboring gene autophagy related 16 like 1 L homeolog

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
EF-hand domain family member D1 L homeolog
Names
EF-hand domain family, member D1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092304.1NP_001085773.1  EF-hand domain family member D1 L homeolog

    See identical proteins and their annotated locations for NP_001085773.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073325
    UniProtKB/TrEMBL
    A0A974CYH8, Q6GP23
    Related
    ENSXLAP00005046858.1, ENSXLAT00005047962.1
    Conserved Domains (2) summary
    cd00051
    Location:86144
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:87144
    EF-hand_7; EF-hand domain pair

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    135847250..135871353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)