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rapgef1.S Rap guanine nucleotide exchange factor 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444199, updated on 11-Apr-2024

Summary

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Official Symbol
rapgef1.S
Official Full Name
Rap guanine nucleotide exchange factor 1 S homeolog
Primary source
Xenbase:XB-GENE-5729564
Locus tag
XELAEV_18041615mg
See related
EnsemblRapid:ENSXLAG00005018285
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rapgef1
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See rapgef1.S in Genome Data Viewer
Location:
chromosome: 8S
Exon count:
23
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (32320974..32374799)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (32190555..32244519)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121397567 Neighboring gene mediator complex subunit 27 S homeolog Neighboring gene proline rich transmembrane protein 1B Neighboring gene uridine-cytidine kinase 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80732

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within Ras protein signal transduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within small GTPase-mediated signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Rap guanine nucleotide exchange factor 1 S homeolog
Names
Rap guanine nucleotide exchange factor (GEF) 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092303.1 → NP_001085772.1  Rap guanine nucleotide exchange factor 1 S homeolog

    See identical proteins and their annotated locations for NP_001085772.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073324
    UniProtKB/TrEMBL
    A0A974C357, Q6GP24
    Related
    ENSXLAP00005054373.1, ENSXLAT00005055547.1
    Conserved Domains (2) summary
    smart00147
    Location:794 → 1023
    RasGEF; Guanine nucleotide exchange factor for Ras-like small GTPases
    smart00229
    Location:645 → 780
    RasGEFN; Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    32320974..32374799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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