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vgll4.S vestigial like family member 4 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444187, updated on 4-Nov-2024

Summary

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Official Symbol
vgll4.S
Official Full Name
vestigial like family member 4 S homeolog
Primary source
Xenbase:XB-GENE-17334149
Locus tag
XELAEV_18002595mg
See related
EnsemblRapid:ENSXLAG00005000075 AllianceGenome:Xenbase:XB-GENE-17334149
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable transcription coactivator binding activity. Predicted to act upstream of or within negative regulation of DNA-templated transcription. Orthologous to human VGLL4 (vestigial like family member 4). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See vgll4.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (131908167..131934277, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694823.1 (1750446..1776817, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene EF-hand and coiled-coil domain containing 1 S homeolog Neighboring gene histamine receptor H1 S homeolog Neighboring gene phosphatidate cytidylyltransferase, mitochondrial Neighboring gene synapsin II S homeolog Neighboring gene metalloproteinase inhibitor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80705

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables transcription coactivator binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
vestigial like family member 4 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092291.1 → NP_001085760.1  vestigial like family member 4 S homeolog

    See identical proteins and their annotated locations for NP_001085760.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073307
    UniProtKB/TrEMBL
    Q6GP39
    Related
    ENSXLAP00005000128.1, ENSXLAT00005000152.1
    Conserved Domains (2) summary
    smart00711
    Location:236 → 251
    TDU; Short repeats in human TONDU, fly vestigial and other proteins
    pfam15245
    Location:14 → 226
    VGLL4; Transcription cofactor vestigial-like protein 4

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    131908167..131934277 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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