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smarca1.L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444176, updated on 17-Aug-2024

Summary

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Official Symbol
smarca1.L
Official Full Name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 L homeolog
Primary source
Xenbase:XB-GENE-866116
Locus tag
XELAEV_18038781mg
See related
EnsemblRapid:ENSXLAG00005011442
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
brg1; snf2l; smarca1
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Genomic context

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See smarca1.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
24
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (41743120..41802215, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (28601527..28633329, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121397294 Neighboring gene protein spinster homolog 1-like Neighboring gene uncharacterized LOC108698389 Neighboring gene GRB2 associated binding protein 3 L homeolog Neighboring gene uncharacterized LOC121397025

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80667

General protein information

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Preferred Names
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 L homeolog; probable global transcription activator SNF2L1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    41743120..41802215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041572727.1 → XP_041428661.1  probable global transcription activator SNF2L1

    UniProtKB/TrEMBL
    A0A1L8F7B7, A0A974C6K3
    Related
    ENSXLAP00005033559.1, ENSXLAT00005034398.1
    Conserved Domains (1) summary
    PLN03142
    Location:64 → 1027
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001092280.1: Suppressed sequence

    Description
    NM_001092280.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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