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sdr16c5.L short chain dehydrogenase/reductase family 16C member 5 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444148, updated on 17-Aug-2024

Summary

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Official Symbol
sdr16c5.L
Official Full Name
short chain dehydrogenase/reductase family 16C member 5 L homeolog
Primary source
Xenbase:XB-GENE-942754
Locus tag
XELAEV_18032037mg
See related
EnsemblRapid:ENSXLAG00005016912
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rdhe2; sdr16c5
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Genomic context

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Location:
chromosome: 6L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (123701956..123720907, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (116559180..116578125, complement)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene PLAG1 zinc finger L homeolog Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 7 L homeolog Neighboring gene proenkephalin L homeolog Neighboring gene 3'(2'), 5'-bisphosphate nucleotidase 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Short chain dehydrogenase/reductase rdhe2 is a novel retinol dehydrogenase essential for frog embryonic development. Belyaeva OV, et al. J Biol Chem, 2012 Mar 16. PMID 22291023, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Rdhe2 is a novel retinol dehydrogenase essential for frog embryonic development.
    Title: Short chain dehydrogenase/reductase rdhe2 is a novel retinol dehydrogenase essential for frog embryonic development.
Submit: New GeneRIF Correction

General gene information

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Homology

Clone Names

  • MGC80593

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
short chain dehydrogenase/reductase family 16C member 5 L homeolog
NP_001085721.1
XP_018121942.1
XP_018121943.1
XP_018121945.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092252.1 → NP_001085721.1  short chain dehydrogenase/reductase family 16C member 5 L homeolog

    See identical proteins and their annotated locations for NP_001085721.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073248
    UniProtKB/TrEMBL
    Q6GP93
    Related
    ENSXLAP00005049819.1, ENSXLAT00005050960.1
    Conserved Domains (2) summary
    cd05339
    Location:38 → 281
    17beta-HSDXI-like_SDR_c; human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs
    pfam00106
    Location:37 → 227
    adh_short; short chain dehydrogenase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    123701956..123720907 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018266456.2 → XP_018121945.1  short chain dehydrogenase/reductase family 16C member 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8FZ21, A0A974HG99

  2. XM_018266453.2 → XP_018121942.1  short chain dehydrogenase/reductase family 16C member 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8FZ21, A0A974HG99

  3. XM_018266454.2 → XP_018121943.1  short chain dehydrogenase/reductase family 16C member 5 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8FZ21, A0A974HG99
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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