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ammecr1l.L AMMECR1 like L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444134, updated on 4-Nov-2024

Summary

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Official Symbol
ammecr1l.L
Official Full Name
AMMECR1 like L homeolog
Primary source
Xenbase:XB-GENE-5787917
Locus tag
XELAEV_18027800mg
See related
EnsemblRapid:ENSXLAG00005016204 AllianceGenome:Xenbase:XB-GENE-5787917
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ammecr1l
Summary
Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ammecr1l.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (134554536..134574094, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (123486277..123505886, complement)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene dysbindin domain-containing protein 2 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide D L homeolog Neighboring gene Sin3A associated protein 130kDa L homeolog Neighboring gene WD repeat domain 33 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80559

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
AMMECR1 like L homeolog
Names
AMME chromosomal region gene 1-like
AMMECR1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092239.1 → NP_001085708.1  AMMECR1 like L homeolog

    See identical proteins and their annotated locations for NP_001085708.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073230
    UniProtKB/TrEMBL
    Q6GPB1
    Related
    ENSXLAP00005047692.1, ENSXLAT00005048807.1
    Conserved Domains (1) summary
    pfam01871
    Location:78 → 247
    AMMECR1; AMMECR1

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    134554536..134574094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018261893.2 → XP_018117382.1  AMMECR1 like L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A1L8GAN6, A0A974HJY7
    Related
    ENSXLAP00005047700.1, ENSXLAT00005048815.1

  2. XM_018261892.2 → XP_018117381.1  AMMECR1 like L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0V552
    Related
    ENSXLAP00005047675.1, ENSXLAT00005048790.1

  3. XM_018261891.2 → XP_018117380.1  AMMECR1 like L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0V552
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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