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rhobtb1.S Rho related BTB domain containing 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444105, updated on 17-Aug-2024

Summary

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Official Symbol
rhobtb1.S
Official Full Name
Rho related BTB domain containing 1 S homeolog
Primary source
Xenbase:XB-GENE-865346
Locus tag
XELAEV_18036803mg
See related
EnsemblRapid:ENSXLAG00005019783
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rhobtb1
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Genomic context

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Location:
chromosome: 7S
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (8544071..8611053, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (8579018..8610568, complement)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene ankyrin 3, node of Ranvier (ankyrin G) S homeolog Neighboring gene cyclin-dependent kinase 1 S homeolog Neighboring gene transmembrane protein 26 S homeolog Neighboring gene putative nuclease HARBI1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80424

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cortical cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within engulfment of apoptotic cell IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within establishment or maintenance of cell polarity IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of cell shape IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within small GTPase-mediated signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Rho related BTB domain containing 1 S homeolog; rho related BTB domain containing 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092210.1 → NP_001085679.1  Rho related BTB domain containing 1 S homeolog

    See identical proteins and their annotated locations for NP_001085679.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073188
    UniProtKB/TrEMBL
    A0A974CB25, Q6GPF1
    Related
    ENSXLAP00005058093.1, ENSXLAT00005059449.1
    Conserved Domains (4) summary
    cd01873
    Location:13 → 207
    RhoBTB; RhoBTB protein is an atypical member of the Rho family of small GTPases
    cd18355
    Location:248 → 454
    BTB1_POZ_RHOBTB1; first BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Rho-related BTB domain-containing protein 1 (RhoBTB1)
    cl38908
    Location:459 → 584
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    cl28903
    Location:587 → 686
    BACK; BACK (BTB and C-terminal Kelch) domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    8544071..8611053 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041570480.1 → XP_041426414.1  rho related BTB domain containing 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974CB25, Q6GPF1
    Conserved Domains (4) summary
    cd01873
    Location:13 → 207
    RhoBTB; RhoBTB protein is an atypical member of the Rho family of small GTPases
    cd18355
    Location:248 → 454
    BTB1_POZ_RHOBTB1; first BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Rho-related BTB domain-containing protein 1 (RhoBTB1)
    cl38908
    Location:459 → 584
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    cl28903
    Location:587 → 686
    BACK; BACK (BTB and C-terminal Kelch) domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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