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mrm3.L mitochondrial rRNA methyltransferase 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444099, updated on 17-Aug-2024

Summary

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Official Symbol
mrm3.L
Official Full Name
mitochondrial rRNA methyltransferase 3 L homeolog
Primary source
Xenbase:XB-GENE-951940
Locus tag
XELAEV_18012740mg
See related
EnsemblRapid:ENSXLAG00005005014
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
mrm3; rnmtl1; rnmtl1.L
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Genomic context

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See mrm3.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (100268193..100276902, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (94525336..94534045, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene multidrug and toxin extrusion protein 2 Neighboring gene uncharacterized LOC121400003 Neighboring gene nucleoredoxin L homeolog Neighboring gene glyoxalase domain containing 4 L homeolog Neighboring gene gem nuclear organelle associated protein 4 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84529

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within methylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within rRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
rRNA methyltransferase 3, mitochondrial
Names
RNA methyltransferase like 1 L homeolog
RNA methyltransferase-like protein 1
rRNA (guanosine-2'-O)-methyltransferase
NP_001085673.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092204.1 → NP_001085673.1  rRNA methyltransferase 3, mitochondrial

    See identical proteins and their annotated locations for NP_001085673.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073125
    UniProtKB/Swiss-Prot
    Q6GPJ4
    UniProtKB/TrEMBL
    A0A974HYE7
    Related
    ENSXLAP00005014968.1, ENSXLAT00005015166.1
    Conserved Domains (3) summary
    smart00967
    Location:120 → 186
    SpoU_sub_bind; RNA 2'-O ribose methyltransferase substrate binding
    COG0566
    Location:105 → 406
    SpoU; tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]
    pfam00588
    Location:204 → 401
    SpoU_methylase; SpoU rRNA Methylase family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    100268193..100276902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GPJ4.1 GenPept UniProtKB/Swiss-Prot:Q6GPJ4

Gene LinkOut

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