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lrrc40.L leucine rich repeat containing 40 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444098, updated on 17-Aug-2024

Summary

Official Symbol
lrrc40.L
Official Full Name
leucine rich repeat containing 40 L homeolog
Primary source
Xenbase:XB-GENE-968694
Locus tag
XELAEV_18022954mg
See related
EnsemblRapid:ENSXLAG00005012294
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
lrrc40
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Genomic context

Location:
chromosome: 4L
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (77523297..77552719)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (72195591..72225049)

Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 13C L homeolog Neighboring gene serine/arginine-rich splicing factor 11 L homeolog Neighboring gene leucine rich repeat containing 7 L homeolog Neighboring gene DEP domain containing 1 L homeolog

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
leucine-rich repeat-containing protein 40

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092203.1NP_001085672.1  leucine-rich repeat-containing protein 40

    See identical proteins and their annotated locations for NP_001085672.1

    Status: PROVISIONAL

    Source sequence(s)
    BC073124
    UniProtKB/Swiss-Prot
    Q6GPJ5
    UniProtKB/TrEMBL
    A0A974HNM7
    Related
    ENSXLAP00005036042.1, ENSXLAT00005036942.1
    Conserved Domains (4) summary
    cd00116
    Location:124372
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:130152
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:521562
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:265324
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    77523297..77552719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)