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cdc42se1.L cdc42 small effector 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 444029, updated on 4-Nov-2024

Summary

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Official Symbol
cdc42se1.L
Official Full Name
cdc42 small effector 1 L homeolog
Primary source
Xenbase:XB-GENE-6256262
Locus tag
XELAEV_18040664mg
See related
EnsemblRapid:ENSXLAG00005026477 AllianceGenome:Xenbase:XB-GENE-6256262
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
scip1; spec1; cdc42se1; cdc42se-B1; cdc42se1-a; cdc42se1-b
Summary
Predicted to enable small GTPase binding activity. Predicted to act upstream of or within regulation of Rho protein signal transduction and regulation of cell shape. Predicted to be located in cytoplasm; cytoskeleton; and plasma membrane. Orthologous to human CDC42SE1 (CDC42 small effector 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See cdc42se1.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (128646178..128677594)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (113384770..113416567)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121397231 Neighboring gene peroxisomal biogenesis factor 19 L homeolog Neighboring gene BCL2/adenovirus E1B 19kD interacting protein like L homeolog Neighboring gene prune exopolyphosphatase 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82585

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of Rho protein signal transduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of cell shape IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CDC42 small effector protein 1-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    128646178..128677594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018228875.2 → XP_018084364.1  CDC42 small effector protein 1-B

    UniProtKB/Swiss-Prot
    Q6GPV4
    UniProtKB/TrEMBL
    A0A974H944
    Related
    ENSXLAP00005078652.1, ENSXLAT00005080243.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001092134.1: Suppressed sequence

    Description
    NM_001092134.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GPV4.1 GenPept UniProtKB/Swiss-Prot:Q6GPV4

Gene LinkOut

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