snrpe.L small nuclear ribonucleoprotein polypeptide E L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: snrpe.L
Official Full Name: small nuclear ribonucleoprotein polypeptide E L homeolog
Primary source: Xenbase:XB-GENE-6251508
Locus tag: XELAEV_18022679mg
See related: EnsemblRapid:ENSXLAG00005033655
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: sme; sm-e; b-raf; snrpe
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Genomic context

Location:: chromosome: 4L

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	4L	NC_054377.1 (58884317..58890396, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	4L	NC_030730.1 (53680189..53686268, complement)

Chromosome 4L - NC_054377.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within RNA splicing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within spliceosomal snRNP assembly	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of U1 snRNP	IEA Inferred from Electronic Annotation more info
part_of U2 snRNP	IEA Inferred from Electronic Annotation more info
part_of U4 snRNP	IEA Inferred from Electronic Annotation more info
part_of U4/U6 x U5 tri-snRNP complex	IEA Inferred from Electronic Annotation more info
part_of U5 snRNP	IEA Inferred from Electronic Annotation more info
located_in intracellular organelle	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of pICln-Sm protein complex	IEA Inferred from Electronic Annotation more info
part_of precatalytic spliceosome	IEA Inferred from Electronic Annotation more info
part_of spliceosomal complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: small nuclear ribonucleoprotein polypeptide E L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001092101.1 → NP_001085570.1 small nuclear ribonucleoprotein polypeptide E L homeolog

See identical proteins and their annotated locations for NP_001085570.1

Status: PROVISIONAL

Source sequence(s)

BC072956

UniProtKB/TrEMBL

A0A974CZS4, Q6GPZ6

Related

ENSXLAP00005100444.1, ENSXLAT00005102401.1

Conserved Domains (1) summary

cd01718
Location:11 → 89

Sm_E; Sm protein E

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

58884317..58890396 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)