fastkd1.L FAST kinase domains 1 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: fastkd1.L
Official Full Name: FAST kinase domains 1 L homeolog
Primary source: Xenbase:XB-GENE-5730785
Locus tag: XELAEV_18044663mg
See related: EnsemblRapid:ENSXLAG00005032185
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: fastkd1
Annotation information: Annotation category: partial on reference assembly
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Genomic context

Location:: chromosome: 9_10L

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10L	NC_054387.1 (75228045..75238122, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10L	NC_030740.1 (64722588..64732665, complement)

Chromosome 9_10L - NC_054387.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within mitochondrial RNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of mitochondrial mRNA stability	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in mitochondrial matrix	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	ISS Inferred from Sequence or Structural Similarity more info	PubMed
located_in ribonucleoprotein granule	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: FAST kinase domain-containing protein 1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001092051.1 → NP_001085520.1 FAST kinase domain-containing protein 1, mitochondrial

See identical proteins and their annotated locations for NP_001085520.1

Status: PROVISIONAL

Source sequence(s)

BC072882

UniProtKB/Swiss-Prot

Q6GQ66

UniProtKB/TrEMBL

A0A974BZE8

Related

ENSXLAP00005096553.1, ENSXLAT00005098329.1

Conserved Domains (3) summary

smart00952
Location:767 → 826

RAP; This domain is found in various eukaryotic species, particularly in apicomplexans

pfam06743
Location:560 → 628

FAST_1; FAST kinase-like protein, subdomain 1

pfam08368
Location:648 → 729

FAST_2; FAST kinase-like protein, subdomain 2

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

75228045..75238122 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)