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socs1.S suppressor of cytokine signaling 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 443921, updated on 18-Sep-2024

Summary

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Official Symbol
socs1.S
Official Full Name
suppressor of cytokine signaling 1 S homeolog
Primary source
Xenbase:XB-GENE-866043
Locus tag
XELAEV_18047490mg
See related
EnsemblRapid:ENSXLAG00005015016
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
jab; cis1; ssi1; tip3; cish1; socs1; ssi-1; socs-1; socs1a; socs1-a; socs1-b
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Genomic context

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See socs1.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (86504518..86508535, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (79821964..79825981, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene class II, major histocompatibility complex, transactivator S homeolog Neighboring gene C-type lectin domain family 16 member A S homeolog Neighboring gene lipopolysaccharide-induced TNF factor S homeolog Neighboring gene stannin S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
suppressor of cytokine signaling 1 S homeolog
Names
suppressor of cytokine signaling 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092026.1 → NP_001085495.1  suppressor of cytokine signaling 1 S homeolog

    See identical proteins and their annotated locations for NP_001085495.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072847
    UniProtKB/TrEMBL
    A0A974BVC8, Q6GQ99
    Related
    ENSXLAP00005043969.1, ENSXLAT00005045041.1
    Conserved Domains (2) summary
    cd10382
    Location:68 → 165
    SH2_SOCS1; Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins
    cd03735
    Location:169 → 211
    SOCS_SOCS1; SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    86504518..86508535 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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