cops8.S COP9 signalosome subunit 8 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: cops8.S
Official Full Name: COP9 signalosome subunit 8 S homeolog
Primary source: Xenbase:XB-GENE-6078417
Locus tag: XELAEV_18047272mg
See related: EnsemblRapid:ENSXLAG00005029406 AllianceGenome:Xenbase:XB-GENE-6078417
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: cop9; csn8; sgn8; cops8; cops8-a; cops8-b; cops8.1
Summary: Predicted to act upstream of or within COP9 signalosome assembly and protein deneddylation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of COP9 signalosome. Orthologous to human COPS8 (COP9 signalosome subunit 8). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 9_10S

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10S	NC_054388.1 (72799824..72816018, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10S	NC_030741.1 (66159465..66175699, complement)

Chromosome 9_10S - NC_054388.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within COP9 signalosome assembly	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein deneddylation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of COP9 signalosome	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: COP9 signalosome complex subunit 8

Names: COP9 constitutive photomorphogenic homolog subunit 8, gene 1; signalosome subunit 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001092022.1 → NP_001085491.1 COP9 signalosome complex subunit 8

See identical proteins and their annotated locations for NP_001085491.1

Status: PROVISIONAL

Source sequence(s)

BC072840

UniProtKB/Swiss-Prot

Q6GQA6

UniProtKB/TrEMBL

A0A974H1D8

Related

ENSXLAP00005087842.1, ENSXLAT00005089504.1

Conserved Domains (1) summary

pfam10075
Location:29 → 161

CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

72799824..72816018 complement

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GenBank, FASTA, Sequence Viewer (Graphics)