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trim29.S tripartite motif containing 29 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 443915, updated on 17-Aug-2024

Summary

Official Symbol
trim29.S
Official Full Name
tripartite motif containing 29 S homeolog
Primary source
Xenbase:XB-GENE-17345221
Locus tag
XELAEV_18037417mg
See related
EnsemblRapid:ENSXLAG00005021536
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

See trim29.S in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (67725647..67756755, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (53400940..53431132, complement)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene nectin cell adhesion molecule 1 S homeolog Neighboring gene paraneoplastic antigen Ma1 homolog Neighboring gene POU class 2 homeobox 3 S homeolog Neighboring gene out at first homolog S homeolog

Genomic regions, transcripts, and products

General protein information

Preferred Names
tripartite motif containing 29 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001092020.1NP_001085489.1  tripartite motif containing 29 S homeolog

    See identical proteins and their annotated locations for NP_001085489.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072837
    UniProtKB/TrEMBL
    A0A974CCI6, Q6GQA9
    Related
    ENSXLAP00005063266.1, ENSXLAT00005064720.1
    Conserved Domains (1) summary
    smart00336
    Location:140180
    BBOX; B-Box-type zinc finger

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    67725647..67756755 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041570475.1XP_041426409.1  tripartite motif containing 29 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LBQ5
    Conserved Domains (3) summary
    TIGR02169
    Location:189287
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd19769
    Location:143188
    Bbox2_TRIM16-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM16, TRIM29, TRIM47 and similar proteins
    cd19840
    Location:91137
    Bbox1_TRIM29; B-box-type 1 zinc finger found in tripartite motif-containing protein 29 (TRIM29) and similar proteins